API documentation

• minorg.MINORg module
• minorg.MINORgCLI module
• minorg.annotation module
• minorg.blast module
• minorg.console module
• minorg.constants module
• minorg.display module
• minorg.dynamic_logger module
• minorg.extend_reference module
• minorg.extract_homologue module
• minorg.fasta module
• minorg.filter_grna module
• minorg.functions module
• minorg.generate_grna module
• minorg.grna module
• minorg.index module
• minorg.log module
• minorg.main module
• minorg.mafftcommandline_add module
• minorg.minimum_set module
• minorg.minweight_sc module
• minorg.pam module
• minorg.parse_config module
• minorg.reference module

gRNA set generator for multiple genes in multiple genomes.

https://rlrq.github.io/MINORg

exception minorg.InputFormatError(error_src=None, error_src_type=None, hint=None, message=None)

Bases: minorg.MINORgError

__init__(error_src=None, error_src_type=None, hint=None, message=None)

exception minorg.InvalidFile(path)

Bases: minorg.MINORgError

__init__(path)

exception minorg.InvalidPath(path)

Bases: minorg.MINORgError

__init__(path)

exception minorg.MINORgError(message)

Bases: Exception

MINORg exception.

MINORg should use this exception (or subclasses of it) to raise non-typer or non-click exceptions without printing traceback. (i.e. Traceback is reserved for errors of unknown origin.)

__init__(message)

print_message()

exception minorg.MINORgWarning

Bases: Warning

MINORg warning.

MINORg should use this warning (or subclasses of it), making it easy to silence all its warnings should you wish to.

>>> import warnings
>>> from minorg import MINORgWarning
>>> warnings.simplefilter('ignore', MINORgWarning)

Consult the warnings module documentation for more details.

exception minorg.UnreadableFile(path)

Bases: minorg.MINORgError

__init__(path)